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  "Title": "Landscape Construction and Simulation for Ising Networks",
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  "Authors@R": "c(\nperson(\"Jingmeng\", \"Cui\", , \"jingmeng.cui@outlook.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3421-8457\")),\nperson(\"Gabriela\", \"Lunansky\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0001-6226-2258\"))\n)",
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  "URL": "https://sciurus365.github.io/Isinglandr/,\nhttps://github.com/Sciurus365/Isinglandr",
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  "Repository": "https://sciurus365.r-universe.dev",
  "Date/Publication": "2025-04-30 04:58:05 UTC",
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  "Author": "Jingmeng Cui [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3421-8457>),\nGabriela Lunansky [ctb] (ORCID:\n<https://orcid.org/0000-0001-6226-2258>)",
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    "beta_list",
    "calculate_barrier",
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    "calculate_stability_se",
    "chain_simulate_Isingland",
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    "make_2d_Isingland",
    "make_2d_Isingland_matrix",
    "make_3d_Isingland",
    "make_Ising_chain",
    "make_Ising_grid",
    "shiny_Isingland_MDD",
    "simulate_Isingland",
    "single_threshold",
    "single_wei",
    "whole_weiadj"
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      "name": "MDDConnectivity",
      "title": "Estimation data for the Ising network of major depressive disorder",
      "object": "MDDConnectivity",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "depmood",
        "lossint",
        "app",
        "sleep",
        "motor",
        "fatigue",
        "worthless",
        "concentration",
        "death"
      ],
      "rows": 9,
      "table": true,
      "tojson": true
    },
    {
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      "title": "Estimation data for the Ising network of major depressive disorder",
      "object": "MDDThresholds",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "autolayer.stability",
      "title": "Get ggplot2 layers of stability metrics to add to the landscape plots",
      "topics": [
        "autolayer.stability",
        "autolayer.stability_2d_Isingland",
        "autolayer.stability_2d_Isingland_matrix"
      ]
    },
    {
      "page": "calculate_barrier.Isingland",
      "title": "Calculate energy barrier for Ising landscapes",
      "topics": [
        "calculate_barrier.2d_Isingland",
        "calculate_barrier.2d_Isingland_matrix",
        "calculate_barrier.Isingland",
        "print.barrier_2d_Isingland",
        "summary.barrier_2d_Isingland",
        "summary.barrier_2d_Isingland_matrix"
      ]
    },
    {
      "page": "calculate_stability",
      "title": "Calculate the stability metrics for Ising landscapes",
      "topics": [
        "calculate_stability",
        "calculate_stability.2d_Isingland",
        "calculate_stability.2d_Isingland_matrix"
      ]
    },
    {
      "page": "calculate_stability_se",
      "title": "Calculate the standard error, confidence interval, and p-value for the stability metrics of an Ising landscape using bootstrapping",
      "topics": [
        "calculate_stability_se",
        "compare_stability",
        "print.stability_se"
      ]
    },
    {
      "page": "chain_simulate_Isingland",
      "title": "Make Ising chains from (a series of) Ising grid(s) and perform a chain simulation.",
      "topics": [
        "chain_simulate_Isingland",
        "make_Ising_chain"
      ]
    },
    {
      "page": "make_2d_Isingland",
      "title": "Make a 2D landscape for an Ising network",
      "topics": [
        "make_2d_Isingland"
      ]
    },
    {
      "page": "make_2d_Isingland_matrix",
      "title": "Make a matrix of landscapes for multiple Ising networks",
      "topics": [
        "make_2d_Isingland_matrix"
      ]
    },
    {
      "page": "make_3d_Isingland",
      "title": "Make a 3D landscape for an Ising network",
      "topics": [
        "make_3d_Isingland"
      ]
    },
    {
      "page": "make_Ising_grid",
      "title": "Make a Grid to Specify Multiple Ising Networks",
      "topics": [
        "make_Ising_grid"
      ]
    },
    {
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        "all_thresholds",
        "beta_list",
        "make_Ising_grid-control-functions",
        "single_threshold",
        "single_wei",
        "whole_weiadj"
      ]
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      "topics": [
        "MDDConnectivity",
        "MDDNetwork",
        "MDDThresholds"
      ]
    },
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      "title": "A shiny app that shows the landscape for the Ising network of major depressive disorder",
      "topics": [
        "shiny_Isingland_MDD"
      ]
    },
    {
      "page": "simulate_Isingland",
      "title": "Simulate a 2D Ising landscape",
      "topics": [
        "simulate_Isingland",
        "simulate_Isingland.2d_Isingland",
        "simulate_Isingland.2d_Isingland_matrix"
      ]
    }
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