Package: simlandr 0.4.0
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simlandr: Simulation-Based Landscape Construction for Dynamical Systems
A toolbox for constructing potential landscapes for dynamical systems using Monte Carlo simulation. The method is based on the potential landscape definition by Wang et al. (2008) <doi:10.1073/pnas.0800579105> (also see Zhou & Li, 2016 <doi:10.1063/1.4943096> for further mathematical discussions) and can be used for a large variety of models.
Authors:
simlandr_0.4.0.tar.gz
simlandr_0.4.0.zip(r-4.5)simlandr_0.4.0.zip(r-4.4)simlandr_0.4.0.zip(r-4.3)
simlandr_0.4.0.tgz(r-4.5-any)simlandr_0.4.0.tgz(r-4.4-any)simlandr_0.4.0.tgz(r-4.3-any)
simlandr_0.4.0.tar.gz(r-4.5-noble)simlandr_0.4.0.tar.gz(r-4.4-noble)
simlandr_0.4.0.tgz(r-4.4-emscripten)simlandr_0.4.0.tgz(r-4.3-emscripten)
simlandr.pdf |simlandr.html✨
simlandr/json (API)
NEWS
# Install 'simlandr' in R: |
install.packages('simlandr', repos = c('https://sciurus365.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sciurus365/simlandr/issues
Pkgdown site:https://sciurus365.github.io
Last updated 6 days agofrom:219033f61c. Checks:8 OK. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 16 2025 |
R-4.5-win | OK | Feb 16 2025 |
R-4.5-mac | OK | Feb 16 2025 |
R-4.5-linux | OK | Feb 16 2025 |
R-4.4-win | OK | Feb 16 2025 |
R-4.4-mac | OK | Feb 16 2025 |
R-4.3-win | OK | Feb 16 2025 |
R-4.3-mac | OK | Feb 16 2025 |
Exports:%>%add_arg_eleas_hash_big_matrixas.mcmc.listattach_all_matricesattach_hash_big_matrixautolayerbatch_simulationcalculate_barriercheck_convfill_in_structget_barrier_heightget_distget_geommake_2d_matrixmake_2d_singlemake_2d_staticmake_2d_tidy_distmake_3d_animationmake_3d_matrixmake_3d_singlemake_3d_staticmake_4d_singlemake_4d_staticmake_arg_gridmake_barrier_grid_2dmake_barrier_grid_3dmodified_simulationmulti_init_simulationnargnelenew_arg_setsave_landscapesim_fun_gradsim_fun_nongradsim_fun_testsim_fun_test2sim_SDE
Dependencies:askpassbase64encBHbigmemorybigmemory.sribslibcachemclassclassIntclicodacodetoolscolorspacecpp11crayoncrosstalkcurldata.tableDBIDerivdigestdplyre1071evaluatefansifarverfastmapFNNfontawesomeforcatsfsfurrrfuturegenericsgganimateggplot2globalsgluegtablehighrhmshtmltoolshtmlwidgetshttrisobandjquerylibjsonlitekernlabKernSmoothknitrkslabelinglaterlatticelazyevallifecyclelistenvlpSolvemagrittrMASSMatrixmclustmemoisemgcvmimemulticoolmunsellmvtnormnlmeopensslparallellypillarpkgconfigplotlypracmaprettyunitsprogresspromisesproxypurrrR6rappdirsRColorBrewerRcpprlangrmarkdowns2sassscalessfSim.DiffProcstringistringrsystibbletidyrtidyselecttinytextransformrtweenrunitsutf8uuidvctrsviridisLitewithrwkxfunyaml
Dynamic models and simulations
Rendered fromsimulation.Rmd
usingknitr::rmarkdown
on Feb 16 2025.Last update: 2025-01-29
Started: 2021-04-07
Construct the potential landscapes from simulation results
Rendered fromlandscape.Rmd
usingknitr::rmarkdown
on Feb 16 2025.Last update: 2025-02-12
Started: 2021-04-12
Calculate the lowest elevation path and barrier height between stable states
Rendered frombarrier.Rmd
usingknitr::rmarkdown
on Feb 16 2025.Last update: 2025-01-29
Started: 2021-04-12
simlandr: Simulation-Based Landscape Construction for Dynamical Systems
Rendered fromsimlandr.Rnw
usingutils::Sweave
on Feb 16 2025.Last update: 2025-01-29
Started: 2022-03-16